Peiying Li, Shikui Tu, and Lei Xu. "GAN Flexible Lmser for Super-resolution." In Proceedings of the 27th ACM International Conference on Multimedia (MM), pp. 756-764. ACM, 2019.
Qingsong Xie, Shikui Tu, Guoxing Wang, Yong Lian and Lei Xu, "Feature Enrichment Based Convolutional Neural Network for Heartbeat Classification from Electrocardiogram," in IEEE Access 2019. doi: 10.1109/ACCESS.2019.2948857
Yongjie Wang, Lin Zeng, Chao Liang, Rui Zan, Weiping Ji, Zhichang Zhang, Yuxuan Wei, Shikui Tu#, and Yang Dong#. "Integrated analysis of transcriptome-wide m6A methylome of osteosarcoma stem cells enriched by chemotherapy." Epigenomics (2019) Oct. 25. (# co-corresponding author)
Yuze Guo, Wenjing Huang, Yajing Chen, and Shikui Tu#. "Regularize Network Skip Connections by Gating Mechanisms for Electron Microscopy Image Segmentation." In 2019 IEEE International Conference on Multimedia and Expo (ICME), pp. 868-873. IEEE, 2019.
Wenjing Huang, Shikui Tu, Lei Xu (2019). Revisit Lmser and its further development based on convolutional layers. arXiv:1904.06307 [cs, stat].
Zhiwen Qiang, Hao Chen, Xiaopeng Zhu, Shikui Tu# (2018). HiVis: a portable, scalable tool for hierarchical visualization and analysis of biological networks, Applied Informatics 2018, 5:3
Gen Zhang*, Shikui Tu*, Tianxiong Yu, Xiao-Ou Zhang, Swapnil S. Parhad, Zhiping Weng, William E. Theurkauf (2018). “Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin,” Cell Reports, vol. 24, no. 13, p. 3413–3422.e4, Sep. 2018. (*co-first author)
Gregory M Davis*, Shikui Tu*, Joshua WT Anderson*, Rhys N Colson, Menachem J Gunzburg, Michelle A Francisco, Debashish Ray, Sean P Shrubsole, Julia A Sobotka, Uri Seroussi, Robert X Lao, Tuhin Maity, Monica Z Wu, Katherine McJunkin, Quaid D Morris, Timothy R Hughes, Jacqueline A Wilce, Julie M Claycomb, Zhiping Weng, Peter R Boag (2018). The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in C. elegans. eLife 2018; 7:e35478 DOI: 10.7554/eLife.35478 (*co-first author)
Jin-Xiong Lv, and Shikui Tu#. (2018). Integration of Data-Space and Statistics-Space Boundary-Based Test to Control the False Positive Rate. In International Conference on Intelligent Computing Methodologies, D.-S. Huang, M.M. Gromiha, K. Han, and A. Hussain, eds. (Springer International Publishing), pp. 628–638.
Donglei Zhang*, Shikui Tu*, Michael Stubna, Wei-Sheng Wu, Wei-Che Huang, Zhiping Weng, Heng-Chi Lee (2018). The rules for piRNA targeting reveal resistance of endogenous genes to piRNA silencing in C. elegans. Science, 359, 587-592, 2 February 2018 (*co-first author)
Enzhi Shen, Hao Chen, Ahmet R. Ozturk, Shikui Tu, Masaki Shirayama, Wen Tang, Yue-He Ding, Si-Yuan Dai, Zhiping Weng, and Craig C. Mello (2018). Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline. Cell 172(5), 937–951.e18, 22 February 2018
Weijian Long, Shikui Tu, and Lei Xu (2017), “A Comparative Study on Lagrange Ying-Yang Alternation Method in Gaussian Mixture-Based Clustering,” in Intelligent Data Engineering and Automated Learning – IDEAL 2017, pp. 489–499, 2017
Yajing Chen, Shikui Tu, Lei Xu (2017). The Prognostic Role of Genes with Skewed Expression Distribution in Lung Adenocarcinoma. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham
Yajing Chen, Shikui Tu, Lei Xu (2017). Survival-Expression Map and Essential Forms of Survival-Expression Relations for Genes. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham
Jin-Xiong Lv, Shikui Tu, Lei Xu (2017). A Comparative Study of Joint-SNVs Analysis Methods and Detection of Susceptibility Genes for Gastric Cancer in Korean Population. In: Sun Y., Lu H., Zhang L., Yang J., Huang H. (eds) Intelligence Science and Big Data Engineering (IScIDE 2017). Lecture Notes in Computer Science, vol 10559. Springer, Cham
Wen Zhang, Xiang Yue, Feng Liu, Yanlin Chen, Shikui Tu, and Xining Zhang, “A unified frame of predicting side effects of drugs by using linear neighborhood similarity,” BMC Systems Biology, vol. 11, no. 6, p. 101, Dec. 2017.
Longqiang Luo, Dingfang Li, Wen Zhang, Shikui Tu, Xiaopeng Zhu, Gang Tian. Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features. PLoS ONE 11(4): e0153268, 2016
Wen Tang, Shikui Tu, Heng-Chi Lee, Zhiping Weng, Craig C. Mello. The RNase PARN-1 Trims piRNA 3′ Ends to Promote Transcriptome Surveillance in C. elegans. Cell, 164, 974-984, February 2016
Shikui Tu, Monica Z Wu, Jie Wang, Asher D Cutter, Zhiping Weng, Julie M Claycomb. Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes. Nucleic Acids Research, 43 (1): 208-224, 2014
Zhao Zhang, Jie Wang, Nadine Schultz, Fan Zhang, Swapnil S Parhad, Shikui Tu, Thom Vreven, Phillip D Zamore, Zhiping Weng, William E Theurkauf. The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing. Cell 157(6):1353-1363, 2014
Shikui Tu, and Lei Xu. Learning binary factor analysis with automatic model selection. Neurocomputing 134:149-158, 2014
Lei Shi, Zhi-Yong Liu, Shikui Tu, and Lei Xu. Learning local factor analysis versus mixture of factor analyzers with automatic model selection. Neurocomputing 139:3-14, 2014
Shikui Tu, Thoru Pederson, and Zhiping Weng. Networking development by Boolean logic. Nucleus 14:4(2), Feb 2013
Shikui Tu and Lei Xu, A Theoretical Investigation of Several Model Selection Criteria for Dimensionality Reduction, Pattern Recognition Letters, 33(9): 1117-1126, 2012
Shikui Tu, Runsheng Chen, and Lei Xu. Transcription Network Analysis by A Sparse Binary Factor Analysis Algorithm, Journal of Integrative Bioinformatics 9 (2):198, 2012
Shikui Tu, Runsheng Chen and Lei Xu. A binary matrix factorization algorithm for protein complex prediction, Proteome Science 9(Suppl 1):S18, 2011
Shikui Tu and Lei Xu. Parameterizations make different model selections: Empirical findings from factor analysis. Frontiers of Electrical and Electronic Engineering in China 6(2):256-274, 2011
Lei Shi, Shikui Tu and Lei Xu. Learning Gaussian mixture with automatic model selection: A comparative study on three Bayesian related approaches. Frontiers of Electrical and Electronic Engineering in China 6(2):215-244, 2011
Shikui Tu and Lei Xu. An investigation of several typical model selection criteria for detecting the number of signals. Frontiers of Electrical and Electronic Engineering in China 6(2):245-255, 2011